C-OPS processing - Revision history

Dcourt at 22:27, 16 August 2016

2016-08-16T22:27:42Z

2016-08-16T22:27:20Z

2016-08-16T22:26:50Z

2016-08-16T22:26:29Z

2016-08-16T21:55:07Z

2016-08-16T21:40:01Z

2016-08-16T21:39:14Z

2016-08-16T19:12:51Z

2016-08-16T18:20:19Z

2016-08-16T18:17:01Z

@@ Line 59: / Line 59: @@
 '''4) Convert final file to SeaBASS format'''
-- use file with 'cmbsbanKrqcmC' prefix
+- use file with 'cmbsbanKrqcm' prefix
 -----------

@@ Line 15: / Line 15: @@
 ) '''Convert C-OPS .CSV files to LCD format.'''
 - cops[serial_number]_to_lcd.pl EXAMPLE: cops#23_to_lcd.pl
 It's important that the filename is formatted so we can get the date and time.
@@ Line 59: / Line 57: @@
 Auto_bt script will write two cast ID matrices if you attempt to call the script twice.  The easiest way to re-process is to start with a clean directory with only .lcd file extensions.
-'''4) Convert final file to SeaBASS format
+'''4) Convert final file to SeaBASS format'''
 '''
 - use file with 'cmbsbanKrqcmC' prefix

@@ Line 15: / Line 15: @@
 ) '''Convert C-OPS .CSV files to LCD format.'''
 - cops[serial_number]_to_lcd.pl EXAMPLE: cops#23_to_lcd.pl
 It's important that the filename is formatted so we can get the date and time.

← Older revision		Revision as of 22:26, 16 August 2016
Line 57:		Line 57:
	Auto_bt script will write two cast ID matrices if you attempt to call the script twice. The easiest way to re-process is to start with a clean directory with only .lcd file extensions.		Auto_bt script will write two cast ID matrices if you attempt to call the script twice. The easiest way to re-process is to start with a clean directory with only .lcd file extensions.

		+	'''4) Convert final file to SeaBASS format
		+	'''
		+	- use file with 'cmbsbanKrqcmC' prefix

	-----------		-----------

@@ Line 55: / Line 55: @@
 '''NOTE'''
-Auto_bt script will write two cast ID matrices if you attempt to call the script twice.  The easiest way to re-process is to start with a clean
+Auto_bt script will write two cast ID matrices if you attempt to call the script twice.  The easiest way to re-process is to start with a clean directory with only .lcd file extensions.
 -----------

← Older revision		Revision as of 21:40, 16 August 2016
Line 48:		Line 48:

	- Type "process_COPS('')" where are the two prefix letters of the file to process		- Type "process_COPS('')" where are the two prefix letters of the file to process
		+
		+	EXAMPLE: process_COPS('PB')

	- Automatic processing will start.		- Automatic processing will start.

← Older revision		Revision as of 21:39, 16 August 2016
Line 38:		Line 38:

	Before running the MATLAB script, open LCD files and check for errors, C-OPS processing expects a "FrameCount" or "LINECOUNT" and "LuZDepth" column. "LINECOUNT" is inserted by the perl script and has no real data bearing. If "FrameCount" is specified in the auto_bt function input, the function will default to a simple integer counter if LINECOUNT is what's used in the lcd file.		Before running the MATLAB script, open LCD files and check for errors, C-OPS processing expects a "FrameCount" or "LINECOUNT" and "LuZDepth" column. "LINECOUNT" is inserted by the perl script and has no real data bearing. If "FrameCount" is specified in the auto_bt function input, the function will default to a simple integer counter if LINECOUNT is what's used in the lcd file.
		+
		+	Also make sure you've set the path(s) that contain the scripts needed for the processing.
		+
		+	EXAMPLE: addpath /home/oceancolor/Plumes_and_Blooms/processing_scripts/PnB_C-OPS_Matlab/
		+
		+	EXAMPLE: addpath /home/oceancolor/Plumes_and_Blooms/processing_scripts/PnB_PRR_Matlab/

	- Start MATLAB in your working directory		- Start MATLAB in your working directory

@@ Line 25: / Line 25: @@
 -----------
-for i in $(ls *P.csv)
+for i in $(ls *_data_*.csv)
 perl /home/oceancolor/processing_scripts/C-OPS/cops#[serial_number]_to_lcd.pl $i
 -----------

@@ Line 4: / Line 4: @@
 '''1) Place relevant processing files in your workspace directory.'''
-- *data*.csv
+- *data*.csv * "C" indicates "cast"
 - *gps*.csv

← Older revision		Revision as of 18:17, 16 August 2016
Line 3:		Line 3:

	'''1) Place relevant processing files in your workspace directory.'''		'''1) Place relevant processing files in your workspace directory.'''
		+
		+	- data.csv
		+
		+	- gps.csv

	- calibrations_C-OPS#[serial_number].txt (*To determine system serial number, open BSI-generated CFG file, or file containing serial numbers column)		- calibrations_C-OPS#[serial_number].txt (*To determine system serial number, open BSI-generated CFG file, or file containing serial numbers column)