SeaBASS Processing - Revision history

Eriks at 18:39, 31 May 2016

2016-05-31T18:39:13Z

Eriks at 20:57, 20 May 2013

2013-05-20T20:57:54Z

Eriks at 20:56, 20 May 2013

2013-05-20T20:56:13Z

Eriks: Created page with 'SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9…'

2012-02-27T22:25:09Z

Created page with 'SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9…'

New page

SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9tosb_E('pb###'). Syntax for the pl scripts run in the unix prompt are as92sb_E filename pb

ex. perl /home/eriks/Erik_perl_seabass/hs2sb_E.pl pb228

This example is also found under commandline_syntax.txt in the file /home/eriks/Erik_perl_seabass/

← Older revision		Revision as of 18:39, 31 May 2016
Line 1:		Line 1:
	SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9tosb_E('pb###'). Syntax for the pl scripts run in the unix prompt are as92sb_E filename pb		SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9tosb_E('pb###'). Syntax for the pl scripts run in the unix prompt are as92sb_E filename pb
		+
		+	For AC9:
		+	Complete processing as normal in matlab, then cd into the final output folder for the AC9 and type ac9tosb_E('pb###')
		+	[[ac9tosb_E]]
		+

	ex. perl /home/eriks/Erik_perl_seabass/hs2sb_E.pl pb228		ex. perl /home/eriks/Erik_perl_seabass/hs2sb_E.pl pb228

@@ Line 6: / Line 6: @@
-From the directory in which you want to do the processing, you'll need to do the following:
+For PRR SeaBASS written by DBC
 ) create a list of calibration files that will be applied to the raw data
 example: calibration
@@ Line 22: / Line 23: @@
 A good method is to link the raw data to your workspace.
-Example: ln -s /home/oceancolor/Plumes_and_Blooms/cruise_data/pb248/PRR/raw/* .
+Example: ln -s /home/oceancolor/Plumes_and_Blooms/cruise_data/pb248/PRR/raw/* .</pre>

← Older revision		Revision as of 20:56, 20 May 2013
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	This example is also found under commandline_syntax.txt in the file /home/eriks/Erik_perl_seabass/		This example is also found under commandline_syntax.txt in the file /home/eriks/Erik_perl_seabass/
		+
		+
		+	From the directory in which you want to do the processing, you'll need to do the following:
		+	1) create a list of calibration files that will be applied to the raw data
		+	example: calibration
		+	0 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9628_0_130411.cfl
		+	1 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9628_1_130411.cfl
		+	2 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9629_2_130411.cfl
		+
		+	2) type: /home/oceancolor/Plumes_and_Blooms/processing_scripts/PRR/prr2lcd -ccalfile rawfile
		+	note the syntax "-ccalfile" this is not a typo
		+
		+	If you are going to copy the binary to your own workspace and run it from there, you will need to change the permissions and the syntax will be:
		+	./prr2lcd -ccalfile rawfile
		+
		+	All this should be done in your own workspace. You do not want to be doing any processing in the raw data folders
		+
		+	A good method is to link the raw data to your workspace.
		+	Example: ln -s /home/oceancolor/Plumes_and_Blooms/cruise_data/pb248/PRR/raw/* .