Difference between revisions of "SeaBASS Processing"
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(Created page with 'SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9…') |
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SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9tosb_E('pb###'). Syntax for the pl scripts run in the unix prompt are as92sb_E filename pb | SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9tosb_E('pb###'). Syntax for the pl scripts run in the unix prompt are as92sb_E filename pb | ||
| + | |||
| + | For AC9: | ||
| + | Complete processing as normal in matlab, then cd into the final output folder for the AC9 and type ac9tosb_E('pb###') | ||
| + | [[ac9tosb_E]] | ||
| + | |||
ex. perl /home/eriks/Erik_perl_seabass/hs2sb_E.pl pb228 | ex. perl /home/eriks/Erik_perl_seabass/hs2sb_E.pl pb228 | ||
This example is also found under commandline_syntax.txt in the file /home/eriks/Erik_perl_seabass/ | This example is also found under commandline_syntax.txt in the file /home/eriks/Erik_perl_seabass/ | ||
| + | |||
| + | |||
| + | For PRR SeaBASS written by DBC | ||
| + | <pre>From the directory in which you want to do the processing, you'll need to do the following: | ||
| + | 1) create a list of calibration files that will be applied to the raw data | ||
| + | example: calibration | ||
| + | 0 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9628_0_130411.cfl | ||
| + | 1 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9628_1_130411.cfl | ||
| + | 2 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9629_2_130411.cfl | ||
| + | |||
| + | 2) type: /home/oceancolor/Plumes_and_Blooms/processing_scripts/PRR/prr2lcd -ccalfile rawfile | ||
| + | note the syntax "-ccalfile" this is not a typo | ||
| + | |||
| + | If you are going to copy the binary to your own workspace and run it from there, you will need to change the permissions and the syntax will be: | ||
| + | ./prr2lcd -ccalfile rawfile | ||
| + | |||
| + | All this should be done in your own workspace. You do not want to be doing any processing in the raw data folders | ||
| + | |||
| + | A good method is to link the raw data to your workspace. | ||
| + | Example: ln -s /home/oceancolor/Plumes_and_Blooms/cruise_data/pb248/PRR/raw/* .</pre> | ||
Latest revision as of 10:39, 31 May 2016
SeaBASS files are submitted to NASA in specific format with .sbin extension. AC9 and HS6 files use ac92sb_E.pl and hs2sb_E.pl files. The AC9 also requires the matlab script ac9tosb_E('pb###'). Syntax for the pl scripts run in the unix prompt are as92sb_E filename pb
For AC9: Complete processing as normal in matlab, then cd into the final output folder for the AC9 and type ac9tosb_E('pb###') ac9tosb_E
ex. perl /home/eriks/Erik_perl_seabass/hs2sb_E.pl pb228
This example is also found under commandline_syntax.txt in the file /home/eriks/Erik_perl_seabass/
For PRR SeaBASS written by DBC
From the directory in which you want to do the processing, you'll need to do the following: 1) create a list of calibration files that will be applied to the raw data example: calibration 0 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9628_0_130411.cfl 1 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9628_1_130411.cfl 2 /home/data65/pb/PRR/CAL_INFO/CAL_Files/9629_2_130411.cfl 2) type: /home/oceancolor/Plumes_and_Blooms/processing_scripts/PRR/prr2lcd -ccalfile rawfile note the syntax "-ccalfile" this is not a typo If you are going to copy the binary to your own workspace and run it from there, you will need to change the permissions and the syntax will be: ./prr2lcd -ccalfile rawfile All this should be done in your own workspace. You do not want to be doing any processing in the raw data folders A good method is to link the raw data to your workspace. Example: ln -s /home/oceancolor/Plumes_and_Blooms/cruise_data/pb248/PRR/raw/* .
