Hs6bt.m

% AC9BT
% FEB 98,FEB 99
% Stephen Wolfe
% Input:	none
% Look for:	list_hs6
% Output: 	z*.lcd.?, z*.lcd.strip
% Assumptions:	fixed for either single casts or yo-yo's. Have to
%               pick something for at least 1 profile of each yo-yo
%               for the profile numbers to work correctly. Can't tell
%               if you skip a down-up pair.
%		
% Purpose:	pick tops and bottoms 
%		
% Calls:	bt_ac9
% Maintain: 	{filename, columnarraylist, disp_text}
% Uses:     	perfect for hs6 processing, ref: hs6.ins
% Example:  	hs6bt
% Notes:        This will run on NT if the call to bbopstrip is
%               commented out and the files are already stripped
%               Should label direction in castid table as well as
%               profile number. Work from left to right. If you
%               choose not to save points for a profile, you can
%               repick them and choose save and then go on.
% TO DO:        The archive scheme does not work due to changes in
%               naming convention. Doesn't create the log directory
%               if it's not there either.

%cd('pb218')
pb=1;
clf;
list_hs6=[];
hs6_files=[];
not_hs6_files=[];
tmpfile=fullfile(pwd,'gohs6bt_tmp');
                                                % check for list_hs6 in pwd
[s,m]=unix('ls list_hs6');
if isempty(m)
 msg=sprintf('Check your list_hs6.');
 disp(msg)
 return
end
clear s m
						% load list_hs6
fid=fopen('list_hs6','r');
while fid,
  check=fgetl(fid);
  if check == -1, break, end
  list_hs6=[list_hs6; check];
end
list_hs6
clear fid check
						% check presence of hs6 files
badfilectr=0;
for i=1:size(list_hs6,1)
 [s,m]=unix(['ls ',list_hs6(i,:)]);
 if s
  badfilectr=badfilectr+1;
 end
end
clear i
if badfilectr
 if badfilectr==1
  msg=sprintf('%i missing hs6 file.',badfilectr);
  disp(msg)
  error('Your hs6list includes a file not in pwd.')
 else
  msg=sprintf('%i missing hs6 files.',badfilectr);
  disp(msg)
  error('Your hs6list includes files not in pwd.')
 end
end
clear s m badfilectr msg
						% loop through 
for i=1:size(list_hs6,1)
  hs6_lcd=list_hs6(i,:)
						% strip em
  hs6_strip=[hs6_lcd '.strip']
 % eval(['!sbtprr_mob ',hs6_lcd])
 % eval(['!bbopstrip -sz  hydro_time depth ' hs6_lcd ' 'hs6_strip]);
  E_BBstrip(pb,hs6_lcd,'hydro_time','depth')
 
 [fileA,headA]=read_strip(hs6_strip);
  %eval(['!rm ''hs6_strip']);
  %cd ..
  [bt_pts]=bt_ac9(fileA);
  
  if ~isempty(bt_pts),
    %create header, castid matrix
    %castid  index   hydro_time       1depth
    %zub11008adt1     7.5000000e+01   2.1710000e+04   2.0443990e+02
    %zub11008adb1     1.2810000e+03   3.7655000e+05   1.3007170e+00 
    %castdir={ 'dt','db','ub','ut' };
    %castdir=[castdir castdir castdir castdir]; %  good for 4 yoyo's
    %if size(bt_pts,1)>size(castdir,2),
    %  error('hs6bt: increase size of castdir.');
    %end
    dd=[];
    idir=[];
    dd=diff(bt_pts(:,3));
    dd=[dd; 0];
    id=1;
    fid=fopen( 'bt.pts', 'w' );
    fprintf(fid,'castid	index	hydro_time	depth\n');
    for i=1:2:size(bt_pts,1),
      if dd(i)>0,
	if idir==1,
	  id=id+1;
	end
	idir=1;
	castdir1(i:i+1,:)=['dt'; 'db'];
      else,
	idir=2;
	castdir1(i:i+1,:)=['ub'; 'ut'];
      end
      bt_castname=[ hs6_lcd(1:9),castdir1(i,:),num2str(id) ];
      fprintf(fid,'%s %1.7e %1.7e %1.7e \n',bt_castname,bt_pts(i,:));
      bt_castname=[ hs6_lcd(1:9),castdir1(i+1,:),num2str(id) ];
      fprintf(fid,'%s %1.7e %1.7e %1.7e \n',bt_castname,bt_pts(i+1,:));
      if idir==2,
	id=id+1;
      end
    end
    fclose(fid);
    
    %do this by calling a script that takes care of the awk and archive
    eval([ '!awk < ' hs6_lcd ' > ' tmpfile...
	  ' ''$1=="<sampled_parameters>"{system("cat bt.pts")}{print $0}'''])
    eval([ '!mv ' tmpfile ' ' hs6_lcd ]);
    
    %archive
    %cruisename=eval(['echo ' hs6_lcd ' | cut -b 3-6'])
    cruisename=hs6_lcd(3:6);
    %archive=[ pwd '/ARCHIVE/' ];
    archive=[ '/home/data92/bbop/ARCHIVE/' ];
    %cp $lcd_file /home/data92/bbop/ARCHIVE/$cruisename/hs6
    eval(['!cp ' hs6_lcd ' ' archive cruisename '/hs6']);
    %echo $lcd_file has been archived to /home/data92/bbop/ARCHIVE/$cruisename/hs6
    eval(['!echo ' hs6_lcd ' has been archived to ',archive, cruisename '/hs6']);

    hs6_files=[hs6_files; hs6_lcd];
  else
    not_hs6_files=[not_hs6_files; hs6_lcd];
  end
      
  %cleanup
  %clear hs6_lcd bt_pts fileA headA hs6_strip;
  %eval('!rm bt.pts');
end
%cd ..
hs6_files
not_hs6_files

hs6bt